Predicted stem-loop structure. The regions of transcription start signal for X/P mRNA (S2) and uORF are shown. The number indicates the nucleotide position of the BDV genome (strain huP2br: Accession number AB258389). doi:10.1371/journal.pone.0051161.gConserved Interaction of Bornavirus ProteinsIndirect Immunofluorescence AssaysOL cells or QT6 cells were seeded onto 8-well chamber slides. One day after seeding, the cells were transfected with Flag-tagged bornavirus X and/or HA-tagged P plasmids using Lipofectamine 2000. The next day, the cells were fixed for 15 min in 4 paraformaldehyde, permeabilized by incubation for 5 min in PBS containing 0.4 Triton X-100 and were treated with 1 bovine serum albumin. After reaction with mouse anti-HA antibody (Roche) and/or rabbit anti-Flag antibody (Sigma-Aldrich), the cells were stained with anti-rabbit Alexa488 (Invitrogen) and/or anti-mouse Alexa555 (Invitrogen) as the secondary antibody. First and second antibody reactions were performed for 1 h at 37uC. Fluorescence was detected using a confocal laser-scanning microscope.(Figure 1B and C). These observations confirm the Calcitonin (salmon) evolutionary diversity among bornavirus genotypes.Conserved Interaction among Bornaviruses between the X and P Title Loaded From File ProteinsTo examine the functional conservation of the X and P proteins among bornavirus genotypes, we first determined the intracellular localization of the proteins. We transfected mammalian (OL) and avian (QT6) cell lines with Flag- and HA-tagged expression constructs of the X and P proteins, respectively, and detected their intranuclear distribution by immunofluorescence assays. As shown in Figure 3, the X and P proteins of ABV and RBV have a similar distribution, as seen for BDV, in both mammalian and avian cell lines. The X protein was distributed diffusely, and mainly located in the cytoplasm of the transfected cells (Figure 3A). On the other hand, a clear nuclear localization of the P protein was detected with all bornavirus genotypes (Figure 3B). Previous studies revealed that BDV P translocates from the nucleus to the cytoplasm with co-expression of the X protein [27]. To understand whether the P proteins of non-mammalian bornaviruses are also exported to the cytoplasm following interaction with their own partner, we co-transfected the X and P expression plasmids into OL and QT6 cells and examined the intracellular distribution of the P proteins at 24 h post-transfection. As shown in Figure 4, the expression of the X protein facilitated the cytoplasmic distribution of the P proteins of both ABV and RBV, as it does for BDV, although the P protein of RBV was seen to be retained in the nuclei to some extent. We also verified the interaction between the X and P proteins of non-mammalian bornaviruses. The X and P expression plasmids were co-transfected into 293T cells and the intra-genotypic interaction was examined by immunoprecipitation analysis. As shown in Figure 5, the X protein of non-mammalian bornaviruses was efficiently precipitated from the cell lysates with the P protein. All these results suggested that the function of the X protein as a regulator of the amount of intranuclear P in infected cells may be conserved evolutionarily.Minireplicon AssayMinireplicon assays were carried out according to Yanai et al. (2006). Briefly, 293T cells were seeded in 12-well plates and transfected with expression plasmids of BDV N, P, RNAdependent RNA polymerase (L) and Pol II-driven minigenome plasmids, with or with.Predicted stem-loop structure. The regions of transcription start signal for X/P mRNA (S2) and uORF are shown. The number indicates the nucleotide position of the BDV genome (strain huP2br: Accession number AB258389). doi:10.1371/journal.pone.0051161.gConserved Interaction of Bornavirus ProteinsIndirect Immunofluorescence AssaysOL cells or QT6 cells were seeded onto 8-well chamber slides. One day after seeding, the cells were transfected with Flag-tagged bornavirus X and/or HA-tagged P plasmids using Lipofectamine 2000. The next day, the cells were fixed for 15 min in 4 paraformaldehyde, permeabilized by incubation for 5 min in PBS containing 0.4 Triton X-100 and were treated with 1 bovine serum albumin. After reaction with mouse anti-HA antibody (Roche) and/or rabbit anti-Flag antibody (Sigma-Aldrich), the cells were stained with anti-rabbit Alexa488 (Invitrogen) and/or anti-mouse Alexa555 (Invitrogen) as the secondary antibody. First and second antibody reactions were performed for 1 h at 37uC. Fluorescence was detected using a confocal laser-scanning microscope.(Figure 1B and C). These observations confirm the evolutionary diversity among bornavirus genotypes.Conserved Interaction among Bornaviruses between the X and P ProteinsTo examine the functional conservation of the X and P proteins among bornavirus genotypes, we first determined the intracellular localization of the proteins. We transfected mammalian (OL) and avian (QT6) cell lines with Flag- and HA-tagged expression constructs of the X and P proteins, respectively, and detected their intranuclear distribution by immunofluorescence assays. As shown in Figure 3, the X and P proteins of ABV and RBV have a similar distribution, as seen for BDV, in both mammalian and avian cell lines. The X protein was distributed diffusely, and mainly located in the cytoplasm of the transfected cells (Figure 3A). On the other hand, a clear nuclear localization of the P protein was detected with all bornavirus genotypes (Figure 3B). Previous studies revealed that BDV P translocates from the nucleus to the cytoplasm with co-expression of the X protein [27]. To understand whether the P proteins of non-mammalian bornaviruses are also exported to the cytoplasm following interaction with their own partner, we co-transfected the X and P expression plasmids into OL and QT6 cells and examined the intracellular distribution of the P proteins at 24 h post-transfection. As shown in Figure 4, the expression of the X protein facilitated the cytoplasmic distribution of the P proteins of both ABV and RBV, as it does for BDV, although the P protein of RBV was seen to be retained in the nuclei to some extent. We also verified the interaction between the X and P proteins of non-mammalian bornaviruses. The X and P expression plasmids were co-transfected into 293T cells and the intra-genotypic interaction was examined by immunoprecipitation analysis. As shown in Figure 5, the X protein of non-mammalian bornaviruses was efficiently precipitated from the cell lysates with the P protein. All these results suggested that the function of the X protein as a regulator of the amount of intranuclear P in infected cells may be conserved evolutionarily.Minireplicon AssayMinireplicon assays were carried out according to Yanai et al. (2006). Briefly, 293T cells were seeded in 12-well plates and transfected with expression plasmids of BDV N, P, RNAdependent RNA polymerase (L) and Pol II-driven minigenome plasmids, with or with.