h 1, 2011; Published April 8, 2011 Copyright: 2011 Panneels et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: This work was supported by the European Community Specific Targeted Research Project grant IMPS. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. E-mail: [email protected] Introduction Membrane proteins represent more than 30% of the cell proteome and play key roles in signal transduction. Dysfunction often leads to major disorders or death and therefore, MPs account for more than 50% of the current drug targets. However, drug discovery as well as detailed biochemical and structural studies are still hindered by a number of problems already EPZ020411 (hydrochloride) encountered in the production of eukaryotic MPs. It is therefore not surprising that the majority of eukaryotic MPs found in the structural database are naturally abundant and that their structures were determined using material from wild-type organisms. Most of them are localized in specialized cells from i.e. the retina for rhodopsin, the lens for aquaporins, the sarcoplasmic reticulum for calcium ATPases and the electric organ of Torpedo for the nicotinic acetylcholine receptor pore. These cells are adapted to the massive production of MPs, which are often densely packed in their respective membrane environment. In contrast to eukaryotic MPs, our understanding of prokaryotic MPs has tremendously increased in the past decade due to the optimization of bacterial strains and expression tools for MP production, as well as by the use of extremophilic organisms as a source for MPs of increased stability. Bacteria enriched in membranes are widely used for MP expression as they seem to offer increased membrane surface as well as an optimized insertion machinery. The crystal structures of close prokaryotic homologs provided relevant models for many mammalian MPs. However, some eukaryotic MPs which are of prime interest in neuropharmacology, like the sodiumdependent serotonin transporter, do not have close bacterial homologs. Importantly, differences in the active sites have been observed e.g. in rhodopsin or potassium April 2011 | Volume 6 | Issue 4 | e18478 Eukaryotic Membrane Protein Expression channels that distinguish the pro- and eukaryotic proteins. The precise architecture of these binding sites can be difficult to model which leads to controversies in the perception of their reaction mechanisms. For MPs regulated by allosteric mechanisms, focusing on the ligand binding site is not sufficient. Among G protein-coupled receptors, metabotropic glutamate receptors are prototypes for allosteric regulation and have been subjected to random high-troughput ligand screens for drug design as well as structure-based virtual screening. Both, high-throughput pharmacological and structural analyses of MPs require amounts of material which are often not provided in sufficient quality and quantity by conventional expression systems. Eukaryotic cells in culture, like insect cells and yeast are commonly used for the overexpression of eukaryotic 10188977 MPs. However, a major drawback is the often limited capacity of these cells for trafficking, foh 1, 2011; Published April 8, 2011 Copyright: 2011 Panneels et al. This is an open-access article distributed under the terms of the Creative Commons 20360563 Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: This work was supported by the European Community Specific Targeted Research Project grant IMPS. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. E-mail: [email protected] Introduction Membrane proteins represent more than 30% of the cell proteome and play key roles in signal transduction. Dysfunction often leads to major disorders or death and therefore, MPs account for more than 50% of the current drug targets. However, drug discovery as well as detailed biochemical and structural studies are still hindered by a number of problems already encountered in the production of eukaryotic MPs. It is therefore not surprising that the majority of eukaryotic MPs found in the structural database are naturally abundant and that their structures were determined using material from wild-type organisms. Most of them are localized in specialized cells from i.e. the retina for rhodopsin, the lens for aquaporins, the sarcoplasmic reticulum for calcium ATPases and the electric organ of Torpedo for the nicotinic acetylcholine receptor pore. These cells are adapted to the massive production of MPs, which are often densely packed in their respective membrane environment. In contrast to eukaryotic MPs, our understanding of prokaryotic MPs has tremendously increased in the past decade due to the optimization of bacterial strains and expression tools for MP production, as well as by the use of extremophilic organisms as a source for MPs of increased stability. Bacteria enriched in membranes are widely used for MP expression as they seem to offer increased membrane surface as well as an optimized insertion machinery. The crystal structures of close prokaryotic homologs provided relevant models for many mammalian MPs. However, some eukaryotic MPs which are of prime interest in neuropharmacology, like the sodiumdependent serotonin transporter, do not have close bacterial homologs. Importantly, differences in the active sites have been observed e.g. in rhodopsin or potassium April 2011 | Volume 6 | Issue 4 | e18478 Eukaryotic Membrane Protein Expression channels that distinguish the pro- and eukaryotic proteins. The precise architecture of these binding sites can be difficult to model which leads to controversies in the perception of their reaction mechanisms. For MPs regulated by allosteric 
mechanisms, focusing on the ligand binding site is not sufficient. Among G protein-coupled receptors, metabotropic glutamate receptors are prototypes for allosteric regulation and have been subjected to random high-troughput ligand screens for drug design as well as structure-based virtual screening. Both, high-throughput pharmacological and structural analyses of MPs require amounts of material which are often not provided in sufficient quality and quantity by conventional expression systems. Eukaryotic cells in culture, like insect cells and yeast are commonly used for the overexpression of eukaryotic MPs. However, a major drawback is the often limited capacity of these cells for trafficking, fo